fastx.hpp File Reference

#include <cuda/std/cstdint>
#include <optional>
#include <string>
#include <utility>
#include <vector>
#include <cuddl/detail/fasta_parser.hpp>
#include <cuddl/error.hpp>

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Namespaces
namespace	cuddl
	Batch operations over contiguous device rows.

Typedefs
using	cuddl::fasta_parse_result = detail::fasta_parse_result
	Result of parsing one FASTA/FASTQ file into packed canonical k-mers.

Functions
Result< fasta_parse_result >	cuddl::parse_fasta_file (std::string const &path, uint32_t k, unsigned threads=std::thread::hardware_concurrency())
	Parses a FASTA/FASTQ file's sequence bases into packed canonical k-mers of length k.