pairwise_counts.cuh File Reference

#include <cuda/std/cstdint>

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Classes
struct	cuddl::pairwise_counts
	Raw per-bucket classification counts for one sketch pair comparison. More...
struct	cuddl::packed_pairwise_counts
	One pair's exact bucket comparison counts in 64 bits, the storage and transfer form of batch-search results. More...
struct	cuddl::pairwise_summary
	Pairwise counts with an optional compile-time cardinality field. More...

Namespaces
namespace	cuddl
	Batch operations over contiguous device rows.

Functions
__host__ __device__ constexpr float	cuddl::weighted_kmer_identity (pairwise_counts const &counts) noexcept
	Weighted k-mer identity of a pair, equal / max(equal + min(lower, higher), 6), as sketch::wkid computes it, or 0 when no bucket is comparable.