refseq_parity.hpp

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#pragma once
 
#include <cuddl/a48.hpp>
#include <cuddl/reference_database.cuh>
 
namespace cuddl {
 
[[nodiscard]] inline score_compatibility
decoded_compatibility(uint8_t k, uint16_t buckets, uint8_t exponent_bits, uint64_t seed) {
    score_compatibility compat;
    compat.kmer_length = k;
    compat.bucket_count = buckets;
    compat.indexed_bucket_count = buckets;
    compat.score_encoder_identity = 2U;
    compat.exponent_bits = exponent_bits;
    compat.mantissa_bits = 16U - exponent_bits;
    compat.hash_identity = 2U;
    compat.hash_seed = seed;
    compat.canonicalisation_policy = 1U;
    compat.blacklist_identity = 0U;
    compat.blacklist_version = 0U;
    compat.key_mask = 0xffffU;
    return compat;
}
 
}  // namespace cuddl