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cuDDL
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Independent host oracle for one query over a decoded reference database. More...
#include <a48.hpp>
Public Attributes | |
| std::vector< uint32_t > | match_counts |
| std::vector< row_summary > | summaries |
Independent host oracle for one query over a decoded reference database.
One fused row-major pass over the flat score rows reproduces, byte for byte over the decoded rows, both quantities the BBTools parity check needs:
match_counts[r] is the DDLIndex match count: every bucket where the query and reference hold the same nonzero score increments the count, so a reference visited from several buckets accumulates all cross-bucket hits. This is exactly the counting rule of BBTools' DDLIndexBase.accumulateCounts, shared bit-identically by the matrix, 32-bit CSR, and CSR2 storage backends.summaries[id] holds the exhaustive lower/equal/higher/both-empty classification of every retained candidate (a reference whose match count meets minimum_matches). The classification matches Vector.compareDDL over BBTools' absolute maxArray: empty-empty pairs are counted separately from equal, and only the stored 16-bit scores are compared.| rows | Flat row-major score rows for reference_count references of bucket_count buckets each. |
| query | One complete decoded query row of bucket_count scores. |
| bucket_count | Width of every row. |
| minimum_matches | Threshold for retaining per-candidate summaries. |
| std::vector<uint32_t> cuddl::a48::oracle_result::match_counts |
| std::vector<row_summary> cuddl::a48::oracle_result::summaries |
1.9.8