cuddl::genome_slice Struct Reference

One rank's share of a genome collection split across an MPI communicator. More...

Public Member Functions
std::span< std::filesystem::path const >	mine () const noexcept

Public Attributes
std::vector< std::filesystem::path >	paths
	Every genome of the collection in reference-ID order; the same on every rank.
std::vector< uint64_t >	bytes
	Size of each genome's file in bytes.
size_t	first = 0
	This rank's genomes are paths[first, last).
size_t	last = 0

Detailed Description

One rank's share of a genome collection split across an MPI communicator.

Definition at line 49 of file distributed.cuh.

Member Function Documentation

mine()

std::span< std::filesystem::path const > cuddl::genome_slice::mine ( ) const

inlinenoexcept

Definition at line 58 of file distributed.cuh.

                                                                         {
        return std::span{paths}.subspan(first, last - first);
    }

Member Data Documentation

bytes

std::vector<uint64_t> cuddl::genome_slice::bytes

Size of each genome's file in bytes.

Definition at line 53 of file distributed.cuh.

first

size_t cuddl::genome_slice::first = 0

This rank's genomes are paths[first, last).

Definition at line 55 of file distributed.cuh.

last

size_t cuddl::genome_slice::last = 0

Definition at line 56 of file distributed.cuh.

paths

std::vector<std::filesystem::path> cuddl::genome_slice::paths

Every genome of the collection in reference-ID order; the same on every rank.

Definition at line 51 of file distributed.cuh.

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The documentation for this struct was generated from the following file:

• distributed.cuh