#include <cuda/__cmath/ceil_div.h>
#include <cuda_runtime.h>
#include <cuda/std/bit>
#include <cuda/stream>
#include <thrust/copy.h>
#include <thrust/detail/execution_policy.h>
#include <thrust/device_vector.h>
#include <thrust/execution_policy.h>
#include <thrust/fill.h>
#include <thrust/transform_reduce.h>
#include <cusbf/detail/record_math.cuh>
#include <algorithm>
#include <array>
#include <concepts>
#include <cstddef>
#include <cstdint>
#include <filesystem>
#include <limits>
#include <span>
#include <string>
#include <string_view>
#include <type_traits>
#include <utility>
#include <vector>
#include <cusbf/Alphabet.cuh>
#include <cusbf/config.cuh>
#include <cusbf/detail/chunk_stream_pair.cuh>
#include <cusbf/detail/count_positive_kmers.cuh>
#include <cusbf/detail/dense_packed.cuh>
#include <cusbf/detail/fastx_chunk.cuh>
#include <cusbf/detail/fastx_dense_batch.hpp>
#include <cusbf/detail/fastx_dispatch.hpp>
#include <cusbf/detail/fastx_host_limits.cuh>
#include <cusbf/detail/fastx_pinned_buffer.hpp>
#include <cusbf/detail/fastx_pipeline_core.cuh>
#include <cusbf/detail/fastx_pipeline_state.cuh>
#include <cusbf/detail/filter_impl.cuh>
#include <cusbf/detail/kernels.cuh>
#include <cusbf/detail/sequence_kmer.cuh>
#include <cusbf/device_span.cuh>
#include <cusbf/error.hpp>
#include <cusbf/Fastx.hpp>
#include <cusbf/filter_ref.cuh>
#include <cusbf/hashutil.cuh>
#include <cusbf/helpers.cuh>
#include <cusbf/normalized_record_batch.hpp>
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