Per-record query payload emitted by FASTX streaming query APIs. More...

#include <Fastx.hpp>

Public Attributes
uint64_t	record_index {}
	Index in the input stream or file.

std::string_view	header {}
	FASTA/FASTQ header (without leading `>` or `@`).

std::string_view	sequence {}
	Record sequence bytes.

uint64_t	queriedBases {}
	Bases included in the query window.

uint64_t	queriedKmers {}
	K-mer windows evaluated.

uint64_t	positive_kmers {}
	K-mers reported present.

std::span< const uint8_t >	hits {}
	Per-k-mer hits (1 = present), valid only for the callback duration.

Detailed Description

Per-record query payload emitted by FASTX streaming query APIs.

Definition at line 173 of file Fastx.hpp.

Member Data Documentation

◆ header

std::string_view cusbf::FastxRecordView::header {}

FASTA/FASTQ header (without leading > or @).

Definition at line 177 of file Fastx.hpp.

177{};

◆ hits

std::span<const uint8_t> cusbf::FastxRecordView::hits {}

Per-k-mer hits (1 = present), valid only for the callback duration.

Definition at line 187 of file Fastx.hpp.

187{};

◆ positive_kmers

uint64_t cusbf::FastxRecordView::positive_kmers {}

K-mers reported present.

Definition at line 185 of file Fastx.hpp.

185{};

◆ queriedBases

uint64_t cusbf::FastxRecordView::queriedBases {}

Bases included in the query window.

Definition at line 181 of file Fastx.hpp.

181{};

◆ queriedKmers

uint64_t cusbf::FastxRecordView::queriedKmers {}

K-mer windows evaluated.

Definition at line 183 of file Fastx.hpp.

183{};

◆ record_index

uint64_t cusbf::FastxRecordView::record_index {}

Index in the input stream or file.

Definition at line 175 of file Fastx.hpp.

175{};

◆ sequence

std::string_view cusbf::FastxRecordView::sequence {}

Record sequence bytes.

Definition at line 179 of file Fastx.hpp.

179{};

The documentation for this struct was generated from the following file:

Fastx.hpp

Public Attributes